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The Nagasaki Shipyard Museum occupies part of the Mitsubishi Heavy Industries Nagasaki Shipyard & Machinery Works, established in 1857 as the Nagasaki Yososho, Japan's first modern Western-style shipbuilding facility under the Tokugawa shogunate. Mitsubishi acquired the shipyard in 1884, transforming it into a major industrial center that constructed warships, passenger liners, and cargo vessels for over 165 years. The facility contributed significantly to Japan's naval development and maritime industry during the Meiji period and beyond.

The museum is housed in the original No. 3 Dry Dock, completed in 1905 and measuring 130 meters in length. This dry dock forms part of the UNESCO World Heritage "Sites of Japan's Meiji Industrial Revolution" designated in 2015. The site demonstrates the technological shift from manual craftsmanship to industrial-scale shipbuilding and represents Nagasaki's role in Japan's modernization.

Visitors to the Nagasaki Shipyard Museum can view historical photographs, ship models, original construction tools, and technical drawings documenting the facility's development. The museum displays artifacts from famous vessels built at the yard, including components from battleships and ocean liners.

Guided tours provide access to the historic dry dock area and explanations of shipbuilding processes, though visitors must book in advance as the museum is located within an active industrial complex with restricted access. Viewing platforms overlook the working shipyard where modern vessels are still under construction, offering perspective on the continuity between historical and contemporary maritime engineering.

The museum is located in the Iizakamachi district of Nagasaki. Access requires advance reservation through official channels, as the facility sits within an operational shipyard with security protocols. Visitors typically arrange tours through the Nagasaki City Tourism Department or authorized tour operators. The nearest public transport stop is accessible via Nagasaki Electric Tramway, with specific meeting points designated for museum tours.